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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
9
total RNA-seq
4
RRBS
1
DNase-seq
Assay category
128
DNA binding
Target of assay
52
transcription factor
47
histone
47
histone modification
29
control
24
broad histone mark
23
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
38
August, 2017
24
February, 2018
3
December, 2017
2
November, 2018
1
January, 2019
1
October, 2017
Available data
128
fastq
127
bam
103
bigWig
93
bed narrowPeak
63
bigBed narrowPeak
52
bed broadPeak
52
bigBed broadPeak
16
tagAlign
3
bed bed3+
Organism
128
Homo sapiens
Biosample type
62
cell line
35
primary cell
24
in vitro differentiated cells
7
tissue
Organ
64
liver
29
pancreas
26
epithelium
9
embryo
1
blood
1
bodily fluid
1
brain
Project
128
AMP
Genome assembly (visualization)
103
hg19
88
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
14
inconsistent control read length
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
cell line
HepG2
61
GM12878
1
primary cell
pancreatic alpha cell
13
pancreatic beta cell
13
skeletal muscle myoblast
9
in vitro differentiated cells
pancreatic endoderm
9
definitive endodermal cell
3
embryonic stem cell
3
endocrine cell
3
posterior foregut
3
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tissue
islet of Langerhans
3
liver
3
brain
1
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