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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 376ChIP-seq
  • 136total RNA-seq
  • 27single cell RNA-seq
  • 18ATAC-seq
  • 4DNase-seq
  • 1Hi-C
Assay category
  • 376DNA binding
Target of assay
  • 229transcription factor
  • 82recombinant protein
  • 76control
  • 69histone
  • 69histone modification
  • 38broad histone mark
  • 31narrow histone mark
  • 26RNA binding protein
  • 9chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 173November, 2017
  • 59August, 2017
  • 48November, 2018
  • 35December, 2017
  • 32September, 2018
  • 15October, 2018
  • 7January, 2019
  • 4October, 2017
  • 3December, 2018
Available data
  • 376bam
  • 376fastq
  • 297bigWig
  • 262bed narrowPeak
  • 226bigBed narrowPeak
  • 12bed bed3+
  • 12bed broadPeak
  • 11tagAlign
  • 6bigBed broadPeak
Organism
  • 370Homo sapiens
Biosample type
  • 221cell line
  • 108tissue
  • 45primary cell
  • 2in vitro differentiated cells
Organ
  • 255liver
  • 65pancreas
  • 29connective tissue
  • 27adipose tissue
  • 21epithelium
  • 16blood
  • 16bodily fluid
  • 6spleen
  • 4brain
Project
  • 376AMP
Genome assembly (visualization)
  • 295hg19
  • 293GRCh38
Lab
  • 376AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 63missing controlled_by
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

376 results

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Clear Filters
ChIP-seq
cell line
HepG2205
GM1287816
tissue
liver50
pancreas13
white adipose tissue12
subcutaneous adipose tissue9
islet of Langerhans6
primary cell
pancreatic endocrine cell23
pancreatic ductal cell13
pancreatic acinar cell8
skeletal muscle myoblast1
in vitro differentiated cells
adipocyte2
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