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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
136
total RNA-seq
27
single cell RNA-seq
18
ATAC-seq
4
DNase-seq
1
Hi-C
Assay category
376
DNA binding
Target of assay
229
transcription factor
82
recombinant protein
76
control
69
histone
69
histone modification
38
broad histone mark
31
narrow histone mark
26
RNA binding protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
173
November, 2017
59
August, 2017
48
November, 2018
35
December, 2017
32
September, 2018
15
October, 2018
7
January, 2019
4
October, 2017
3
December, 2018
Available data
376
bam
376
fastq
297
bigWig
262
bed narrowPeak
226
bigBed narrowPeak
12
bed bed3+
12
bed broadPeak
11
tagAlign
6
bigBed broadPeak
Organism
370
Homo sapiens
Biosample type
221
cell line
108
tissue
45
primary cell
2
in vitro differentiated cells
Organ
255
liver
65
pancreas
29
connective tissue
27
adipose tissue
21
epithelium
16
blood
16
bodily fluid
6
spleen
4
brain
Project
376
AMP
Genome assembly (visualization)
295
hg19
293
GRCh38
Lab
376
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
63
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
376 results
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Clear Filters
ChIP-seq
cell line
HepG2
205
GM12878
16
tissue
liver
50
pancreas
13
white adipose tissue
12
subcutaneous adipose tissue
9
islet of Langerhans
6
+ See 5 more…
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
skeletal muscle myoblast
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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