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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 136ChIP-seq
  • 37single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 2ATAC-seq
  • 2DNase-seq
Assay category
  • 136DNA binding
Target of assay
  • 58transcription factor
  • 57histone
  • 57histone modification
  • 35RNA binding protein
  • 30broad histone mark
  • 27narrow histone mark
  • 20chromatin remodeller
  • 20control
Date released
  • 52December, 2017
  • 22November, 2017
  • 21October, 2018
  • 19November, 2018
  • 12January, 2019
  • 8August, 2017
  • 2December, 2018
Available data
  • 136bam
  • 136fastq
  • 114bigWig
  • 109bed narrowPeak
  • 86bigBed narrowPeak
  • 15bed bed3+
Organism
  • 136Homo sapiens
Biosample type
  • 48cell line
  • 48in vitro differentiated cells
  • 37tissue
  • 3stem cell
Organ
  • 60liver
  • 22pancreas
  • 19epithelium
  • 13embryo
  • 10blood
  • 10bodily fluid
  • 7spleen
  • 6connective tissue
  • 1adipose tissue
Project
  • 136AMP
Genome assembly (visualization)
  • 118hg19
  • 117GRCh38
Lab
  • 136AMP-T2D consortium
Audit category:
  • 4inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 13missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

136 results

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Clear Filters
ChIP-seq
cell line
HepG238
GM1287810
in vitro differentiated cells
hepatocyte15
pancreatic endoderm9
Posterior foregut5
adipocyte5
definitive endodermal cell5
tissue
body of pancreas20
spleen7
right lobe of liver6
islet of Langerhans2
liver1
stem cell
hESC3
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