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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
37
single cell RNA-seq
6
WGBS
5
GRO-seq
2
ATAC-seq
2
DNase-seq
Assay category
136
DNA binding
Target of assay
58
transcription factor
57
histone
57
histone modification
35
RNA binding protein
30
broad histone mark
27
narrow histone mark
20
chromatin remodeller
20
control
Date released
52
December, 2017
22
November, 2017
21
October, 2018
19
November, 2018
12
January, 2019
8
August, 2017
2
December, 2018
Available data
136
bam
136
fastq
114
bigWig
109
bed narrowPeak
86
bigBed narrowPeak
15
bed bed3+
Organism
136
Homo sapiens
Biosample type
48
cell line
48
in vitro differentiated cells
37
tissue
3
stem cell
Organ
60
liver
22
pancreas
19
epithelium
13
embryo
10
blood
10
bodily fluid
7
spleen
6
connective tissue
1
adipose tissue
Project
136
AMP
Genome assembly (visualization)
118
hg19
117
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
136 results
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ChIP-seq
cell line
HepG2
38
GM12878
10
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
adipocyte
5
definitive endodermal cell
5
+ See 2 more…
tissue
body of pancreas
20
spleen
7
right lobe of liver
6
islet of Langerhans
2
liver
1
+ See 1 more…
stem cell
hESC
3
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