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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1622ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 201DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1622DNA binding
Target of assay
  • 922histone modification
  • 921histone
  • 468narrow histone mark
  • 452broad histone mark
  • 414transcription factor
  • 281control
  • 92RNA binding protein
  • 89recombinant protein
  • 19chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 292November, 2017
  • 242October, 2019
  • 232August, 2017
  • 165May, 2021
  • 120May, 2019
  • 80April, 2019
  • 74October, 2018
  • 68December, 2017
  • 63November, 2018
  • 50May, 2020
  • 43August, 2021
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 31June, 2019
  • 24January, 2019
  • 13November, 2019
  • 8February, 2021
  • 6October, 2017
  • 3March, 2020
  • 2February, 2018
Available data
  • 1331bam
  • 1186bigWig
  • 1136bed narrowPeak
  • 664bigBed narrowPeak
  • 608fastq
  • 359tagAlign
  • 32bed broadPeak
  • 25bed bed3+
  • 6bigBed broadPeak
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1622Homo sapiens
Biosample type
  • 862tissue
  • 371cell line
  • 233primary cell
  • 155in vitro differentiated cells
  • 1stem cell
Organ
  • 434liver
  • 200brain
  • 168pancreas
  • 151connective tissue
  • 134heart
  • 98epithelium
  • 96blood vessel
  • 96vasculature
  • 71adipose tissue
  • 66limb
  • 59blood
  • 59bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 20spleen
  • 17vein
  • 5eye
  • 4embryo
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1534AMP
  • 88T1D
Genome assembly (visualization)
  • 1094hg19
  • 1086GRCh38
Lab
  • 1410AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 56inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 25inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

1622 results

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Clear Filters
ChIP-seq
tissue
liver139
islet of Langerhans53
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2266
GM1287859
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
pancreatic ductal cell13
in vitro differentiated cells
adipocyte67
embryonic stem cell37
neural progenitor cell21
hepatocyte15
cardiomyocytes3
stem cell
hESC1
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