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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1678ChIP-seq
  • 1527total RNA-seq
  • 521ATAC-seq
  • 368single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1678DNA binding
Target of assay
  • 951histone modification
  • 950histone
  • 485narrow histone mark
  • 464broad histone mark
  • 409transcription factor
  • 313control
  • 102RNA binding protein
  • 25chromatin remodeller
  • 19recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 335November, 2017
  • 264August, 2017
  • 242October, 2019
  • 165May, 2021
  • 120May, 2019
  • 80April, 2019
  • 73December, 2017
  • 50May, 2020
  • 45October, 2018
  • 44November, 2018
  • 43August, 2021
  • 40May, 2024
  • 32December, 2018
  • 32September, 2018
  • 31June, 2019
  • 24February, 2018
  • 15October, 2017
  • 13January, 2019
  • 13November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1385bam
  • 1220bigWig
  • 1155bed narrowPeak
  • 664fastq
  • 661bigBed narrowPeak
  • 398tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 53bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1671Homo sapiens
Biosample type
  • 859tissue
  • 386cell line
  • 278primary cell
  • 152in vitro differentiated cells
  • 3stem cell
Organ
  • 443liver
  • 218brain
  • 198pancreas
  • 134heart
  • 114epithelium
  • 113connective tissue
  • 102vasculature
  • 99blood vessel
  • 66limb
  • 64adipose tissue
  • 52kidney
  • 50blood
  • 50bodily fluid
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 17vein
  • 7spleen
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1590AMP
  • 88T1D
Genome assembly (visualization)
  • 1138hg19
  • 1096GRCh38
Lab
  • 1466AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 59inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 87missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

1678 results

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Clear Filters
ChIP-seq
tissue
liver145
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
heart left ventricle35
cell line
HepG2290
GM1287850
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast14
in vitro differentiated cells
embryonic stem cell40
adipocyte36
neural progenitor cell21
pancreatic endoderm18
definitive endodermal cell8
stem cell
hESC3
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