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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 128ChIP-seq
  • 49ATAC-seq
  • 16snATAC-seq
  • 5GRO-seq
  • 5total RNA-seq
  • 1FAIRE-seq
  • 1Hi-C
  • 1single cell RNA-seq
Assay category
  • 128DNA binding
Target of assay
  • 75transcription factor
  • 38control
  • 15histone
  • 15histone modification
  • 12broad histone mark
  • 12recombinant protein
  • 3chromatin remodeller
  • 3narrow histone mark
  • 1RNA binding protein
Date released
  • 53November, 2017
  • 48December, 2017
  • 18August, 2017
  • 5January, 2019
  • 4November, 2018
Available data
  • 128bam
  • 128fastq
  • 90bigWig
  • 83bed narrowPeak
  • 67bigBed narrowPeak
  • 11bed bed3+
  • 4bed broadPeak
  • 4bigBed broadPeak
Organism
  • 128Homo sapiens
Biosample type
  • 58cell line
  • 54tissue
  • 14in vitro differentiated cells
  • 2stem cell
Organ
  • 99liver
  • 6pancreas
  • 5blood
  • 5bodily fluid
  • 5connective tissue
  • 5embryo
  • 2adipose tissue
  • 1epithelium
Project
  • 128AMP
Genome assembly (visualization)
  • 90hg19
  • 85GRCh38
Lab
  • 128AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 2missing controlled_by
Audit category:
  • 19inconsistent control read length
BIOSAMPLE
ASSAY

128 results

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Clear Filters
ChIP-seq
cell line
HepG253
GM128785
tissue
liver46
pancreas4
islet of Langerhans2
white adipose tissue2
in vitro differentiated cells
pancreatic endoderm4
adipocyte3
Posterior foregut2
definitive endodermal cell2
primitive gut cell2
stem cell
hESC2
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