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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
49
ATAC-seq
16
snATAC-seq
5
GRO-seq
5
total RNA-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
128
DNA binding
Target of assay
75
transcription factor
38
control
15
histone
15
histone modification
12
broad histone mark
12
recombinant protein
3
chromatin remodeller
3
narrow histone mark
1
RNA binding protein
Date released
53
November, 2017
48
December, 2017
18
August, 2017
5
January, 2019
4
November, 2018
Available data
128
bam
128
fastq
90
bigWig
83
bed narrowPeak
67
bigBed narrowPeak
11
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
128
Homo sapiens
Biosample type
58
cell line
54
tissue
14
in vitro differentiated cells
2
stem cell
Organ
99
liver
6
pancreas
5
blood
5
bodily fluid
5
connective tissue
5
embryo
2
adipose tissue
1
epithelium
Project
128
AMP
Genome assembly (visualization)
90
hg19
85
GRCh38
Lab
128
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
19
inconsistent control read length
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
cell line
HepG2
53
GM12878
5
tissue
liver
46
pancreas
4
islet of Langerhans
2
white adipose tissue
2
in vitro differentiated cells
pancreatic endoderm
4
adipocyte
3
Posterior foregut
2
definitive endodermal cell
2
primitive gut cell
2
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stem cell
hESC
2
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