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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
264
total RNA-seq
176
ATAC-seq
173
ChIP-seq
106
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
pCHi-C
1
whole genome sequencing assay
Assay category
173
DNA binding
Target of assay
107
histone
107
histone modification
61
narrow histone mark
49
control
46
broad histone mark
17
transcription factor
5
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
153
bam
122
bed narrowPeak
122
bigWig
74
tagAlign
64
bigBed narrowPeak
3
bed bed3+
Organism
173
Homo sapiens
Biosample type
130
tissue
21
in vitro differentiated cells
18
cell line
4
primary cell
Organ
72
liver
57
heart
23
kidney
4
epithelium
Project
173
AMP
Genome assembly (visualization)
121
hg19
99
GRCh38
Lab
155
AMP-T2D consortium
18
Bing Ren, UCSD
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
173 results
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Clear Filters
ChIP-seq
tissue
liver
50
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
in vitro differentiated cells
neural progenitor cell
21
cell line
HepG2
18
primary cell
hepatocyte
4
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