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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
61
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
5
Hi-C
4
DNase-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
40
October, 2019
6
February, 2021
3
November, 2017
Available data
99
bam
76
bigWig
73
bed narrowPeak
69
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
4
bigBed broadPeak
3
fastq
Organism
99
Homo sapiens
Biosample type
73
tissue
20
primary cell
6
cell line
Organ
552
liver
218
brain
218
pancreas
141
connective tissue
129
heart
123
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
49
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
17
vein
4
gonad
4
ovary
eye
1
lymph node
1
pituitary gland
Project
99
AMP
Genome assembly (visualization)
76
hg19
73
GRCh38
Lab
99
AMP-T2D consortium
lab.title!
Kyle Gaulton, UCSD
month_released!
June, 2019
organ_slims!
eye
BIOSAMPLE
ASSAY
99 results
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Clear Filters
ChIP-seq
tissue
tibial artery
23
ascending aorta
16
thoracic aorta
16
aorta
13
coronary artery
5
primary cell
endothelial cell of umbilical vein
17
brain microvascular endothelial cell
3
cell line
smooth muscle cell of the coronary artery
6
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