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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
total RNA-seq
49
ATAC-seq
45
ChIP-seq
36
DNase-seq
5
single cell RNA-seq
4
small RNA-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
45
DNA binding
Target of assay
207
histone
histone modification
123
narrow histone mark
84
broad histone mark
37
control
8
transcription factor
4
RNA binding protein
Date released
18
November, 2017
12
October, 2019
6
February, 2021
6
May, 2019
3
October, 2017
Available data
44
bam
25
tagAlign
11
bigWig
8
bed narrowPeak
8
fastq
4
bigBed narrowPeak
3
bed broadPeak
3
bigBed broadPeak
Organism
45
Homo sapiens
Biosample type
33
tissue
6
cell line
6
primary cell
Organ
449
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
37
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
45
AMP
Genome assembly (visualization)
11
hg19
8
GRCh38
Lab
45
AMP-T2D consortium
lab.title!
Maike Sander, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
tissue
tibial artery
5
brain
3
coronary artery
3
layer of hippocampus
3
caudate nucleus
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
6
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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