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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
ChIP-seq
26
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
321
DNA binding
Target of assay
245
transcription factor
98
histone
histone modification
73
control
66
recombinant protein
56
broad histone mark
42
narrow histone mark
38
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
318
November, 2017
97
August, 2017
70
November, 2018
63
December, 2017
46
October, 2019
44
October, 2018
34
December, 2018
28
May, 2019
23
May, 2020
20
April, 2019
18
January, 2019
12
June, 2019
8
August, 2021
8
February, 2018
8
February, 2021
6
September, 2017
5
May, 2021
3
November, 2019
3
October, 2017
Available data
320
bam
306
fastq
260
bigWig
240
bed narrowPeak
239
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
11
tagAlign
3
tar
Organism
321
Homo sapiens
Biosample type
303
cell line
12
tissue
6
primary cell
Organ
300
liver
18
brain
7
epithelium
4
vasculature
3
pancreas
2
blood vessel
Project
321
AMP
Genome assembly (visualization)
258
hg19
208
GRCh38
Lab
321
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
321 results
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Clear Filters
ChIP-seq
cell line
HepG2
300
EndoC_BH1
3
tissue
layer of hippocampus
3
caudate nucleus
2
cingulate gyrus
2
middle frontal area 46
2
substantia nigra
2
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primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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