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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
93
single cell RNA-seq
72
total RNA-seq
48
ATAC-seq
30
DNase-seq
8
WGBS
8
snATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
194
DNA binding
Target of assay
98
histone
98
histone modification
68
transcription factor
57
broad histone mark
41
narrow histone mark
26
control
21
RNA binding protein
10
chromatin remodeller
Date released
57
April, 2019
40
May, 2024
27
December, 2018
21
May, 2019
18
January, 2019
15
November, 2018
6
February, 2021
5
June, 2019
5
October, 2019
Available data
168
bed narrowPeak
168
bigWig
153
bam
118
bigBed narrowPeak
60
fastq
6
tagAlign
Organism
194
Homo sapiens
Biosample type
123
tissue
66
cell line
5
primary cell
Organ
504
liver
218
brain
134
heart
124
pancreas
103
epithelium
102
vasculature
99
blood vessel
limb
60
blood
60
bodily fluid
52
kidney
36
connective tissue
35
nerve
34
artery
23
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
194
AMP
Genome assembly (visualization)
167
GRCh38
128
hg19
Lab
154
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
1
inconsistent control
month_released!
August, 2017
organ_slims!
limb
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ChIP-seq
tissue
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
right atrium auricular region
10
+ See 2 more…
cell line
GM12878
60
smooth muscle cell of the coronary artery
6
primary cell
cardiac fibroblast
5
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