Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
638
ChIP-seq
261
total RNA-seq
94
single cell RNA-seq
69
ATAC-seq
35
DNase-seq
10
WGBS
7
Hi-C
6
pCHi-C
4
small RNA-seq
3
RRBS
2
STARR-seq
1
whole genome sequencing assay
Assay category
638
DNA binding
Target of assay
351
transcription factor
167
histone
167
histone modification
117
control
87
narrow histone mark
82
recombinant protein
80
broad histone mark
69
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
57
April, 2019
50
May, 2020
49
November, 2018
August, 2017
40
May, 2024
22
August, 2021
21
May, 2019
10
October, 2019
6
February, 2021
5
June, 2019
Available data
578
bam
529
bigWig
510
bed narrowPeak
427
fastq
411
bigBed narrowPeak
72
tagAlign
58
bed broadPeak
58
bigBed broadPeak
3
bed bed3+
3
tar
Organism
638
Homo sapiens
Biosample type
384
cell line
230
tissue
15
in vitro differentiated cells
9
primary cell
Organ
504
liver
218
brain
134
heart
124
pancreas
103
epithelium
102
vasculature
99
blood vessel
limb
60
blood
60
bodily fluid
52
kidney
36
connective tissue
35
nerve
34
artery
23
adipose tissue
22
embryo
20
spleen
17
musculature of body
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
638
AMP
Genome assembly (visualization)
485
hg19
455
GRCh38
Lab
580
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
August, 2017
organ_slims!
limb
BIOSAMPLE
ASSAY
638 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
378
smooth muscle cell of the coronary artery
6
tissue
liver
97
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
primary cell
cardiac fibroblast
5
hepatocyte
4
See all biosamples
Download