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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
Assay category
23
DNA binding
Target of assay
334
transcription factor
97
control
82
recombinant protein
70
histone
70
histone modification
58
RNA binding protein
narrow histone mark
23
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
August, 2017
10
December, 2017
8
November, 2017
3
October, 2019
2
August, 2021
Available data
23
bigWig
22
bam
22
bed narrowPeak
18
fastq
17
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
7
tagAlign
1
bed bed3+
Organism
23
Homo sapiens
Biosample type
9
cell line
7
in vitro differentiated cells
6
tissue
1
primary cell
Organ
70
brain
57
heart
46
pancreas
45
blood vessel
45
vasculature
38
epithelium
34
limb
23
liver
16
nerve
15
kidney
14
artery
9
vein
8
musculature of body
4
connective tissue
4
embryo
4
spleen
Project
23
AMP
Genome assembly (visualization)
23
hg19
21
GRCh38
Lab
22
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent control read length
month_released!
August, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
cell line
HepG2
9
in vitro differentiated cells
hepatocyte
7
tissue
liver
3
right lobe of liver
3
primary cell
hepatocyte
1
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