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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
total RNA-seq
89
ATAC-seq
89
ChIP-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Assay category
89
DNA binding
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
24
control
7
transcription factor
6
RNA binding protein
Date released
26
August, 2017
24
October, 2019
September, 2018
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
89
bam
64
bigWig
60
bed narrowPeak
32
fastq
22
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
89
Homo sapiens
Biosample type
71
primary cell
15
cell line
3
in vitro differentiated cells
Organ
489
liver
218
brain
186
pancreas
153
connective tissue
134
heart
102
vasculature
99
blood vessel
89
epithelium
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
17
vein
9
embryo
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
87
AMP
2
T1D
Genome assembly (visualization)
64
hg19
60
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
4
inconsistent control read length
month_released!
December, 2017
December, 2019
September, 2018
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
epithelial cell of proximal tubule
10
kidney epithelial cell
5
+ See 4 more…
cell line
EndoC_BH1
15
in vitro differentiated cells
pancreatic PP cell
3
See all biosamples
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