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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
681
ChIP-seq
261
total RNA-seq
94
single cell RNA-seq
70
ATAC-seq
13
WGBS
7
Hi-C
6
pCHi-C
4
DNase-seq
4
RRBS
4
small RNA-seq
2
STARR-seq
1
whole genome sequencing assay
Assay category
681
DNA binding
Target of assay
354
transcription factor
198
histone modification
197
histone
126
control
99
broad histone mark
98
narrow histone mark
82
recombinant protein
68
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
57
April, 2019
50
May, 2020
49
November, 2018
48
August, 2017
40
May, 2024
22
August, 2021
21
May, 2019
10
October, 2019
6
February, 2021
June, 2019
Available data
598
bam
543
bigWig
524
bed narrowPeak
452
fastq
413
bigBed narrowPeak
92
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
681
Homo sapiens
Biosample type
384
cell line
278
tissue
15
in vitro differentiated cells
4
primary cell
Organ
552
liver
218
brain
218
pancreas
141
connective tissue
129
heart
123
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
49
kidney
35
nerve
34
artery
29
musculature of body
22
embryo
20
spleen
17
vein
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
681
AMP
Genome assembly (visualization)
500
hg19
470
GRCh38
Lab
623
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
January, 2021
June, 2019
BIOSAMPLE
ASSAY
681 results
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ChIP-seq
cell line
HepG2
378
smooth muscle cell of the coronary artery
6
tissue
liver
145
left cardiac atrium
40
heart left ventricle
35
heart
14
heart right ventricle
13
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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