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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
391
total RNA-seq
196
ChIP-seq
92
ATAC-seq
80
single cell RNA-seq
11
snATAC-seq
10
MeRIP-seq
10
WGBS
8
Hi-C
7
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
196
DNA binding
Target of assay
144
histone
144
histone modification
74
broad histone mark
70
narrow histone mark
42
control
19
transcription factor
RNA binding protein
Date released
92
August, 2017
45
October, 2018
32
September, 2018
October, 2019
12
November, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
176
bam
146
bigWig
139
fastq
126
bed narrowPeak
47
bigBed narrowPeak
19
bed bed3+
19
tagAlign
12
bed broadPeak
Organism
189
Homo sapiens
Biosample type
109
tissue
70
primary cell
14
cell line
3
in vitro differentiated cells
Organ
489
liver
196
pancreas
142
connective tissue
131
brain
118
heart
97
epithelium
68
adipose tissue
57
vasculature
55
blood vessel
50
blood
50
bodily fluid
39
musculature of body
28
kidney
22
embryo
20
spleen
10
artery
7
limb
2
eye
Project
192
AMP
4
T1D
Genome assembly (visualization)
148
hg19
142
GRCh38
Lab
196
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
53
missing controlled_by
Audit category:
9
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2022
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ChIP-seq
tissue
islet of Langerhans
48
body of pancreas
30
endocrine pancreas
16
pancreas
15
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
14
in vitro differentiated cells
pancreatic PP cell
3
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