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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
33
DNase-seq
20
total RNA-seq
6
Hi-C
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
GRO-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
61
DNA binding
Target of assay
45
histone
45
histone modification
24
broad histone mark
21
narrow histone mark
13
control
3
transcription factor
Date released
22
August, 2017
13
December, 2017
10
June, 2019
9
February, 2018
7
May, 2019
Available data
41
bed narrowPeak
41
bigWig
39
bam
22
fastq
15
tagAlign
14
bigBed narrowPeak
13
bed broadPeak
3
bed bed3+
Organism
61
Homo sapiens
Biosample type
29
tissue
22
in vitro differentiated cells
10
primary cell
Organ
552
liver
203
brain
186
pancreas
153
connective tissue
134
heart
108
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
61
AMP
Genome assembly (visualization)
42
hg19
28
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
October, 2017
September, 2018
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
tissue
skeletal muscle tissue
22
muscle of leg
7
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
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