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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
591
ChIP-seq
195
total RNA-seq
39
DNase-seq
24
ATAC-seq
10
Hi-C
7
RRBS
6
WGBS
5
small RNA-seq
4
pCHi-C
2
STARR-seq
2
single cell RNA-seq
1
snATAC-seq
1
whole genome sequencing assay
Assay category
591
DNA binding
Target of assay
338
transcription factor
136
histone modification
135
histone
114
control
82
recombinant protein
73
narrow histone mark
62
broad histone mark
58
RNA binding protein
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
70
August, 2017
63
December, 2017
50
May, 2020
49
November, 2018
22
August, 2021
10
June, 2019
7
May, 2019
5
October, 2019
Available data
527
bam
459
bigWig
452
fastq
440
bed narrowPeak
366
bigBed narrowPeak
101
tagAlign
71
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
591
Homo sapiens
Biosample type
378
cell line
184
tissue
15
in vitro differentiated cells
14
primary cell
Organ
552
liver
211
pancreas
203
brain
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
591
AMP
Genome assembly (visualization)
456
hg19
373
GRCh38
Lab
573
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
8
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
month_released!
October, 2017
BIOSAMPLE
ASSAY
591 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
skeletal muscle tissue
22
right lobe of liver
10
muscle of leg
7
in vitro differentiated cells
hepatocyte
15
primary cell
skeletal muscle satellite cell
8
hepatocyte
4
skeletal muscle cell
2
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