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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
total RNA-seq
197
ChIP-seq
48
ATAC-seq
17
pCHi-C
1
DNAme array
1
single cell RNA-seq
Assay category
197
DNA binding
Target of assay
172
histone
172
histone modification
93
broad histone mark
79
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
406
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6
September, 2017
3
March, 2020
Available data
155
bigWig
152
bed narrowPeak
123
bam
90
tagAlign
32
fastq
Organism
197
Homo sapiens
Biosample type
153
primary cell
43
in vitro differentiated cells
1
cell line
Organ
36
pancreas
25
epithelium
Project
112
AMP
85
T1D
Genome assembly (visualization)
155
hg19
122
GRCh38
Lab
154
Kyle Gaulton, UCSD
43
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
February, 2018
BIOSAMPLE
ASSAY
197 results
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ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
33
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
37
cardiomyocytes
3
pancreatic PP cell
3
cell line
EndoC_BH1
1
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