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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
240
ChIP-seq
32
DNase-seq
31
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
GRO-seq
Assay category
240
DNA binding
Target of assay
199
histone
199
histone modification
125
narrow histone mark
74
broad histone mark
35
control
6
transcription factor
3
RNA binding protein
Date released
91
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
13
December, 2017
9
February, 2018
Available data
218
bam
186
bigWig
184
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
40
fastq
15
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
1
tagAlign bed3+
Organism
240
Homo sapiens
Biosample type
209
tissue
22
in vitro differentiated cells
9
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
240
AMP
Genome assembly (visualization)
186
GRCh38
138
hg19
Lab
240
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
esophagus
BIOSAMPLE
ASSAY
240 results
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Clear Filters
ChIP-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 63 more…
in vitro differentiated cells
pancreatic endoderm
18
Hepatic endoderm
4
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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