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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
68
DNase-seq
24
total RNA-seq
12
ATAC-seq
7
Hi-C
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
1
WGBS
Assay category
284
DNA binding
Target of assay
236
histone
236
histone modification
132
narrow histone mark
104
broad histone mark
45
control
3
RNA binding protein
3
transcription factor
Date released
143
October, 2019
91
November, 2017
35
May, 2019
15
October, 2017
Available data
261
bam
220
bigWig
218
bed narrowPeak
142
bigBed narrowPeak
118
tagAlign
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
284
Homo sapiens
Biosample type
275
tissue
9
primary cell
Organ
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
284
AMP
Genome assembly (visualization)
218
GRCh38
171
hg19
Lab
284
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
liver
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ChIP-seq
tissue
tibial nerve
35
layer of hippocampus
23
tibial artery
23
brain
20
substantia nigra
16
+ See 67 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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