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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
471
total RNA-seq
72
ChIP-seq
25
ATAC-seq
6
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
72
DNA binding
Target of assay
histone
76
histone modification
44
broad histone mark
39
transcription factor
33
control
31
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
48
August, 2017
23
October, 2018
1
June, 2019
Available data
65
bam
64
fastq
39
bigWig
22
bed narrowPeak
11
bed bed3+
5
bigBed narrowPeak
3
tagAlign
Organism
72
Homo sapiens
Biosample type
41
tissue
30
in vitro differentiated cells
1
primary cell
Organ
450
liver
75
connective tissue
67
pancreas
59
blood
59
bodily fluid
41
adipose tissue
heart
36
epithelium
31
brain
31
vasculature
29
blood vessel
22
kidney
17
limb
14
artery
14
spleen
11
nerve
10
embryo
6
musculature of body
2
eye
2
vein
Project
72
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
heart
target.investigated_as!
histone
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
tissue
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
subcutaneous abdominal adipose tissue
5
adipose tissue
1
in vitro differentiated cells
adipocyte
30
primary cell
mesenchymal stem cell
1
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