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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
total RNA-seq
113
ChIP-seq
25
ATAC-seq
13
single cell RNA-seq
10
snATAC-seq
9
DNase-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
RRBS
Assay category
113
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
83
August, 2017
18
October, 2018
11
June, 2019
1
October, 2019
Available data
62
bam
51
fastq
35
bed narrowPeak
35
bigWig
22
tagAlign
9
bigBed narrowPeak
1
bed bed3+
1
bed broadPeak
Organism
113
Homo sapiens
Biosample type
57
tissue
45
in vitro differentiated cells
11
primary cell
Organ
215
brain
214
liver
199
pancreas
120
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
lung
Project
113
AMP
Genome assembly (visualization)
36
hg19
35
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
113 results
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Clear Filters
ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
10
omental fat pad
8
adipose tissue
2
islet of Langerhans
1
in vitro differentiated cells
adipocyte
45
primary cell
mesenchymal stem cell
7
cardiac fibroblast
4
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