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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 131total RNA-seq
  • 129ChIP-seq
  • 103ATAC-seq
  • 70single cell RNA-seq
  • 47WGBS
  • 19DNase-seq
  • 8Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 129DNA binding
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 27control
  • 9transcription factor
  • 8RNA binding protein
  • 1chromatin remodeller
Date released
  • 26August, 2017
  • 24October, 2019
  • 21September, 2018
  • 19December, 2017
  • 13November, 2019
  • 6June, 2019
  • 6November, 2017
  • 5May, 2019
  • 4August, 2021
  • 4May, 2021
  • 1March, 2020
Available data
  • 129bam
  • 101bigWig
  • 97bed narrowPeak
  • 72fastq
  • 36bigBed narrowPeak
  • 7tagAlign
  • 6bed broadPeak
  • 6bigBed broadPeak
  • 3bed bed3+
Organism
  • 129Homo sapiens
Biosample type
  • 92primary cell
  • 22in vitro differentiated cells
  • 15cell line
Organ
  • 552liver
  • 218brain
  • 218pancreas
  • 153connective tissue
  • 134heart
  • 129epithelium
  • 102vasculature
  • 99blood vessel
  • 73adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 52kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 127AMP
  • 2T1D
Genome assembly (visualization)
  • 101hg19
  • 97GRCh38
Lab
  • 129AMP-T2D consortium
Audit category:
  • 25inconsistent ontology term
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

129 results

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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein17
pancreatic alpha cell13
pancreatic beta cell13
pancreatic ductal cell13
epithelial cell of proximal tubule10
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
cell line
EndoC_BH115
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