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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
572
ChIP-seq
189
total RNA-seq
24
ATAC-seq
7
DNase-seq
7
WGBS
5
pCHi-C
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
572
DNA binding
Target of assay
344
transcription factor
116
control
109
histone modification
108
histone
82
recombinant protein
62
narrow histone mark
58
RNA binding protein
46
broad histone mark
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
63
December, 2017
55
November, 2018
50
May, 2020
48
August, 2017
22
August, 2021
7
December, 2018
7
January, 2019
5
October, 2019
Available data
530
bam
472
fastq
444
bigWig
425
bed narrowPeak
364
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
572
Homo sapiens
Biosample type
378
cell line
175
tissue
15
in vitro differentiated cells
4
primary cell
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
0
esophagus
Project
572
AMP
Genome assembly (visualization)
441
hg19
372
GRCh38
Lab
554
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
572 results
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Clear Filters
ChIP-seq
cell line
HepG2
378
tissue
liver
145
spleen
20
right lobe of liver
10
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
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