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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1690ChIP-seq
  • 1337total RNA-seq
  • 426ATAC-seq
  • 280single cell RNA-seq
  • 185DNase-seq
  • 87RNA microarray
  • 79snATAC-seq
  • 75WGBS
  • 29pCHi-C
  • 25Hi-C
  • 21RRBS
  • 7small RNA-seq
  • 6MeRIP-seq
  • 5GRO-seq
  • 5STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2FAIRE-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1690DNA binding
Target of assay
  • 884histone modification
  • 883histone
  • 481transcription factor
  • 458broad histone mark
  • 424narrow histone mark
  • 320control
  • 105RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 264August, 2017
  • 201October, 2019
  • 120May, 2019
  • 104May, 2021
  • 91December, 2017
  • 79April, 2019
  • 73October, 2018
  • 70November, 2018
  • 50May, 2020
  • 40May, 2024
  • 34December, 2018
  • 32September, 2018
  • 25January, 2019
  • 24February, 2018
  • 24June, 2019
  • 18August, 2021
  • 13November, 2019
  • 9October, 2017
  • 8February, 2021
  • 4September, 2017
  • 1March, 2020
Available data
  • 1420bam
  • 1247bigWig
  • 1195bed narrowPeak
  • 819fastq
  • 792bigBed narrowPeak
  • 282tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 16bed bed3+
  • 3tar
Organism
  • 1683Homo sapiens
Biosample type
  • 826tissue
  • 484cell line
  • 218primary cell
  • 159in vitro differentiated cells
  • 3stem cell
Organ
  • 542liver
  • 195pancreas
  • 180brain
  • 135connective tissue
  • 134heart
  • 125epithelium
  • 102vasculature
  • 99blood vessel
  • 69adipose tissue
  • 66limb
  • 60blood
  • 60bodily fluid
  • 51kidney
  • 39musculature of body
  • 35nerve
  • 34artery
  • 22embryo
  • 20spleen
  • 17vein
  • 5eye
  • 4gonad
  • 4ovary
  • 1lymph node
Project
  • 1650AMP
  • 40T1D
Genome assembly (visualization)
  • 1158hg19
  • 1118GRCh38
Lab
  • 1535AMP-T2D consortium
  • 97Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 18Bing Ren, UCSD
Audit category:
  • 52inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 75missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

1690 results

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Clear Filters
ChIP-seq
tissue
liver139
islet of Langerhans49
left cardiac atrium40
subcutaneous abdominal adipose tissue36
body of pancreas35
cell line
HepG2378
GM1287860
EndoC_BH115
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte38
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
skeletal muscle myoblast15
in vitro differentiated cells
adipocyte60
embryonic stem cell29
pancreatic endoderm18
hepatocyte15
definitive endodermal cell8
stem cell
hESC3
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