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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1476total RNA-seq
  • 1297ChIP-seq
  • 441ATAC-seq
  • 363single cell RNA-seq
  • 190DNase-seq
  • 87RNA microarray
  • 77snATAC-seq
  • 67WGBS
  • 36pCHi-C
  • 24Hi-C
  • 18small RNA-seq
  • 5GRO-seq
  • 4Capture-C
  • 4FAIRE-seq
  • 4MeRIP-seq
  • 3snDrop-seq
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1297DNA binding
Target of assay
  • 889histone modification
  • 888histone
  • 451narrow histone mark
  • 436broad histone mark
  • 281control
  • 127transcription factor
  • 41RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 280August, 2017
  • 186October, 2019
  • 164May, 2021
  • 111November, 2017
  • 106May, 2019
  • 79April, 2019
  • 67October, 2018
  • 50May, 2020
  • 41August, 2021
  • 40May, 2024
  • 35December, 2017
  • 32September, 2018
  • 24February, 2018
  • 15June, 2019
  • 15October, 2017
  • 13November, 2019
  • 9January, 2019
  • 9November, 2018
  • 7December, 2018
  • 6February, 2021
  • 6September, 2017
  • 2March, 2020
Available data
  • 1007bam
  • 868bigWig
  • 821bed narrowPeak
  • 376fastq
  • 372tagAlign
  • 335bigBed narrowPeak
  • 38bed bed3+
  • 35bed broadPeak
  • 1tagAlign bed3+
Organism
  • 1290Homo sapiens
Biosample type
  • 837tissue
  • 221primary cell
  • 171in vitro differentiated cells
  • 68cell line
Organ
  • 207brain
  • 197pancreas
  • 164liver
  • 152connective tissue
  • 123heart
  • 83epithelium
  • 73adipose tissue
  • 68vasculature
  • 67blood vessel
  • 61limb
  • 36kidney
  • 35nerve
  • 29musculature of body
  • 27artery
  • 20spleen
  • 19embryo
  • 4blood
  • 4bodily fluid
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1pituitary gland
  • 1vein
Project
  • 1211AMP
  • 86T1D
Genome assembly (visualization)
  • 792GRCh38
  • 782hg19
Lab
  • 1087AMP-T2D consortium
  • 154Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 16Bing Ren, UCSD
Audit category:
  • 34inconsistent ontology term
Audit category:
  • 77missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

1297 results

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Clear Filters
ChIP-seq
tissue
liver109
islet of Langerhans71
left cardiac atrium40
subcutaneous abdominal adipose tissue36
tibial nerve35
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
pancreatic alpha cell13
pancreatic ductal cell13
in vitro differentiated cells
adipocyte67
embryonic stem cell40
neural progenitor cell21
pancreatic endoderm15
definitive endodermal cell5
cell line
HepG243
EndoC_BH113
GM128784
smooth muscle cell of the coronary artery4
Panc12
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