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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 190total RNA-seq
  • 181ChIP-seq
  • 105ATAC-seq
  • 89single cell RNA-seq
  • 28pCHi-C
  • 27DNase-seq
  • 11small RNA-seq
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 181DNA binding
Target of assay
  • 133histone
  • 133histone modification
  • 90narrow histone mark
  • 43broad histone mark
  • 33transcription factor
  • 15control
  • 9RNA binding protein
Date released
  • 61May, 2021
  • 41October, 2019
  • 32August, 2017
  • 25August, 2021
  • 7June, 2019
  • 6October, 2017
  • 3December, 2017
  • 2March, 2020
  • 2September, 2017
  • 1April, 2019
  • 1October, 2018
Available data
  • 158bam
  • 143bigWig
  • 130bed narrowPeak
  • 116tagAlign
  • 38fastq
  • 37bed bed3+
  • 9bigBed narrowPeak
  • 1tagAlign bed3+
Organism
  • 181Homo sapiens
Biosample type
  • 81tissue
  • 61primary cell
  • 39in vitro differentiated cells
Organ
  • 38brain
  • 23pancreas
  • 18connective tissue
  • 10liver
  • 4adipose tissue
  • 4epithelium
  • 1kidney
  • 1pituitary gland
Project
  • 133AMP
  • 48T1D
Genome assembly (visualization)
  • 148GRCh38
  • 147hg19
Lab
  • 124AMP-T2D consortium
  • 57Kyle Gaulton, UCSD
Audit category:
  • 7inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

181 results

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Clear Filters
ChIP-seq
tissue
islet of Langerhans22
brain6
liver6
white adipose tissue4
angular gyrus2
primary cell
monocyte47
mesenchymal stem cell7
hepatocyte4
naive thymus-derived CD4-positive, alpha-beta T cell2
neutrophil1
in vitro differentiated cells
neural progenitor cell21
embryonic stem cell11
adipocyte7
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