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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 574ChIP-seq
  • 90ATAC-seq
  • 51total RNA-seq
  • 22DNase-seq
  • 21pCHi-C
  • 19RRBS
  • 10Hi-C
  • 8WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 1FAIRE-seq
Assay category
  • 574DNA binding
Target of assay
  • 387transcription factor
  • 128histone
  • 128histone modification
  • 88recombinant protein
  • 73RNA binding protein
  • 65broad histone mark
  • 63narrow histone mark
  • 54control
  • 32chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 295November, 2017
  • 61November, 2018
  • 59December, 2017
  • 56October, 2019
  • 27December, 2018
  • 16August, 2017
  • 16January, 2019
  • 16June, 2019
  • 14May, 2019
  • 7October, 2018
  • 2August, 2021
  • 2February, 2021
  • 1April, 2019
  • 1March, 2020
  • 1May, 2021
Available data
  • 571bam
  • 522bigWig
  • 504bed narrowPeak
  • 481fastq
  • 466bigBed narrowPeak
  • 79bed broadPeak
  • 79bigBed broadPeak
  • 26tagAlign
  • 15bed bed3+
  • 3tar
Organism
  • 574Homo sapiens
Biosample type
  • 416cell line
  • 70tissue
  • 58primary cell
  • 27in vitro differentiated cells
  • 3stem cell
Organ
  • 388liver
  • 56blood
  • 56bodily fluid
  • 46epithelium
  • 34vasculature
  • 32blood vessel
  • 21pancreas
  • 16kidney
  • 16vein
  • 11brain
  • 11heart
  • 10musculature of body
  • 7artery
  • 5limb
  • 3embryo
  • 2eye
  • 1connective tissue
Project
  • 572AMP
  • 2T1D
Genome assembly (visualization)
  • 523hg19
  • 474GRCh38
Lab
  • 572AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 28inconsistent control
  • 25inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

574 results

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Clear Filters
ChIP-seq
cell line
HepG2335
GM1287856
Panc111
RCC 7860 HIF1a re-expression4
RCC 7860 HIF2a over-expression3
tissue
liver36
body of pancreas7
thoracic aorta7
brain5
heart5
primary cell
endothelial cell of umbilical vein16
skeletal muscle myoblast15
skeletal muscle satellite cell8
kidney epithelial cell4
astrocyte of the cerebellum2
in vitro differentiated cells
hepatocyte15
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
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