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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1286total RNA-seq
  • 1116ChIP-seq
  • 336ATAC-seq
  • 274single cell RNA-seq
  • 163DNase-seq
  • 87RNA microarray
  • 72snATAC-seq
  • 67WGBS
  • 15Hi-C
  • 8pCHi-C
  • 7small RNA-seq
  • 5GRO-seq
  • 2Capture-C
  • 2HiChIP
  • 2RRBS
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1FAIRE-seq
  • 1MPRA
  • 1STARR-seq
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snDrop-seq
  • 1whole genome sequencing assay
Assay category
  • 1116DNA binding
Target of assay
  • 756histone modification
  • 755histone
  • 393broad histone mark
  • 361narrow histone mark
  • 266control
  • 94transcription factor
  • 32RNA binding protein
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 1recombinant protein
Date released
  • 248August, 2017
  • 145October, 2019
  • 111November, 2017
  • 106May, 2019
  • 103May, 2021
  • 78April, 2019
  • 66October, 2018
  • 50May, 2020
  • 40May, 2024
  • 32December, 2017
  • 32September, 2018
  • 24February, 2018
  • 16August, 2021
  • 13November, 2019
  • 9January, 2019
  • 9November, 2018
  • 9October, 2017
  • 8June, 2019
  • 7December, 2018
  • 6February, 2021
  • 4September, 2017
Available data
  • 849bam
  • 725bigWig
  • 691bed narrowPeak
  • 338fastq
  • 326bigBed narrowPeak
  • 256tagAlign
  • 35bed broadPeak
  • 1bed bed3+
Organism
  • 1109Homo sapiens
Biosample type
  • 756tissue
  • 160primary cell
  • 132in vitro differentiated cells
  • 68cell line
Organ
  • 174pancreas
  • 169brain
  • 154liver
  • 134connective tissue
  • 123heart
  • 79epithelium
  • 69adipose tissue
  • 68vasculature
  • 67blood vessel
  • 61limb
  • 35kidney
  • 35nerve
  • 29musculature of body
  • 27artery
  • 20spleen
  • 19embryo
  • 4blood
  • 4bodily fluid
  • 4gonad
  • 4ovary
  • 3eye
  • 1lymph node
  • 1vein
Project
  • 1078AMP
  • 38T1D
Genome assembly (visualization)
  • 644GRCh38
  • 635hg19
Lab
  • 963AMP-T2D consortium
  • 97Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 16Bing Ren, UCSD
Audit category:
  • 27inconsistent ontology term
Audit category:
  • 63missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

1116 results

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Clear Filters
ChIP-seq
tissue
liver103
islet of Langerhans49
left cardiac atrium40
subcutaneous abdominal adipose tissue36
tibial nerve35
primary cell
monocyte38
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
pancreatic alpha cell13
pancreatic ductal cell13
in vitro differentiated cells
adipocyte60
embryonic stem cell29
pancreatic endoderm15
definitive endodermal cell5
primitive gut cell5
cell line
HepG243
EndoC_BH113
GM128784
smooth muscle cell of the coronary artery4
Panc12
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