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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1757ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1757DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 335control
  • RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 369November, 2017
  • 288August, 2017
  • 242October, 2019
  • 160May, 2021
  • 115May, 2019
  • 90December, 2017
  • 76April, 2019
  • 63October, 2018
  • 50May, 2020
  • 49November, 2018
  • 42August, 2021
  • 35May, 2024
  • 32December, 2018
  • 32September, 2018
  • 27June, 2019
  • 24February, 2018
  • 19January, 2019
  • 15October, 2017
  • 12November, 2019
  • 8February, 2021
  • 6September, 2017
  • 3March, 2020
Available data
  • 1475bam
  • 1284bigWig
  • 1220bed narrowPeak
  • 768fastq
  • 708bigBed narrowPeak
  • 398tagAlign
  • 105bed broadPeak
  • 70bigBed broadPeak
  • 51bed bed3+
  • 2tar
  • 1tagAlign bed3+
Organism
  • 1750Homo sapiens
Biosample type
  • 879tissue
  • 419cell line
  • 269primary cell
  • 187in vitro differentiated cells
  • 3stem cell
Organ
  • 494liver
  • 215brain
  • 209pancreas
  • 143connective tissue
  • 123heart
  • 121epithelium
  • 97vasculature
  • 95blood vessel
  • 68adipose tissue
  • 66limb
  • 50blood
  • 50bodily fluid
  • 49kidney
  • 39musculature of body
  • 35nerve
  • 33artery
  • 22embryo
  • 20spleen
  • 17vein
  • 4eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1669AMP
  • 88T1D
Genome assembly (visualization)
  • 1205hg19
  • 1166GRCh38
Lab
  • 1556AMP-T2D consortium
  • 149Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
  • 17Bing Ren, UCSD
Audit category:
  • 55inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 86missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • RNA binding protein
BIOSAMPLE
ASSAY

1757 results

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Clear Filters
ChIP-seq
tissue
liver144
islet of Langerhans69
subcutaneous abdominal adipose tissue36
left cardiac atrium35
tibial nerve35
cell line
HepG2324
GM1287850
EndoC_BH114
Panc113
smooth muscle cell of the coronary artery6
primary cell
monocyte85
CD8-positive, alpha-beta T cell33
pancreatic endocrine cell23
endothelial cell of umbilical vein17
pancreatic alpha cell13
in vitro differentiated cells
adipocyte63
embryonic stem cell35
neural progenitor cell21
pancreatic endoderm18
hepatocyte13
stem cell
hESC3
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