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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1536ChIP-seq
  • 1527total RNA-seq
  • 531ATAC-seq
  • 366single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1536DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 335November, 2017
  • 246August, 2017
  • 203October, 2019
  • 156May, 2021
  • 97May, 2019
  • 73December, 2017
  • 66April, 2019
  • 64November, 2018
  • 45October, 2018
  • 40May, 2024
  • 32September, 2018
  • 31August, 2021
  • 30December, 2018
  • 27May, 2020
  • 23June, 2019
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 11November, 2019
  • 5February, 2021
  • 3March, 2020
Available data
  • 1370bigWig
  • 1325bed narrowPeak
  • 1275bam
  • 801bigBed narrowPeak
  • 689fastq
  • 330tagAlign
  • 114bed broadPeak
  • 79bigBed broadPeak
  • 44bed bed3+
  • 3tar
  • 1tagAlign bed3+
Organism
  • 1530Homo sapiens
Biosample type
  • 722tissue
  • 404cell line
  • 247primary cell
  • 161in vitro differentiated cells
  • 2stem cell
Organ
  • 444liver
  • 190brain
  • 170pancreas
  • 118connective tissue
  • 114heart
  • 102epithelium
  • 80vasculature
  • 78blood vessel
  • 54blood
  • 54bodily fluid
  • 49adipose tissue
  • 49limb
  • 40kidney
  • 33musculature of body
  • 25artery
  • 24nerve
  • 15embryo
  • 15vein
  • 12spleen
  • 4eye
  • 4gonad
  • 4ovary
  • 1lymph node
  • 1pituitary gland
Project
  • 1448AMP
  • 88T1D
Genome assembly (visualization)
  • 1276hg19
  • 1257GRCh38
Lab
  • 1336AMP-T2D consortium
  • 146Kyle Gaulton, UCSD
  • 40Patrick T. Ellinor, Broad
  • 14Bing Ren, UCSD
Audit category:
  • 47inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • control
BIOSAMPLE
ASSAY

1536 results

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Clear Filters
ChIP-seq
tissue
liver102
islet of Langerhans58
left cardiac atrium40
subcutaneous abdominal adipose tissue31
heart left ventricle29
cell line
HepG2318
GM1287854
EndoC_BH113
Panc17
smooth muscle cell of the coronary artery4
primary cell
monocyte85
CD8-positive, alpha-beta T cell30
pancreatic endocrine cell23
endothelial cell of umbilical vein15
skeletal muscle myoblast14
in vitro differentiated cells
adipocyte59
embryonic stem cell34
hepatocyte14
neural progenitor cell14
pancreatic endoderm13
stem cell
hESC2
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