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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • 854ChIP-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 854DNA binding
Target of assay
  • histone modification
  • 1016histone
  • 514narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 335control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 318November, 2017
  • 97August, 2017
  • 70November, 2018
  • 63December, 2017
  • 46October, 2019
  • 44October, 2018
  • 34December, 2018
  • 28May, 2019
  • 25May, 2021
  • 23August, 2021
  • 23May, 2020
  • 20April, 2019
  • 18January, 2019
  • 12June, 2019
  • 8February, 2018
  • 8February, 2021
  • 6September, 2017
  • 5May, 2024
  • 3November, 2019
  • 3October, 2017
Available data
  • 793bam
  • 627fastq
  • 521bigWig
  • 474bed narrowPeak
  • 410bigBed narrowPeak
  • 77tagAlign
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 28bed bed3+
  • 3tar
Organism
  • 853Homo sapiens
Biosample type
  • 446cell line
  • 279tissue
  • 86in vitro differentiated cells
  • 42primary cell
  • 1stem cell
Organ
  • 449liver
  • 75connective tissue
  • 67pancreas
  • 59blood
  • 59bodily fluid
  • 41adipose tissue
  • 37heart
  • 36epithelium
  • 31brain
  • 31vasculature
  • 29blood vessel
  • 22kidney
  • 17limb
  • 14artery
  • 14spleen
  • 11nerve
  • 10embryo
  • 6musculature of body
  • 2eye
  • 2vein
Project
  • 854AMP
Genome assembly (visualization)
  • 521hg19
  • 462GRCh38
Lab
  • 814AMP-T2D consortium
  • 20Kyle Gaulton, UCSD
  • 15Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 26inconsistent ontology term
Audit category:
  • 35missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
target.investigated_as!
  • histone modification
BIOSAMPLE
ASSAY

854 results

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Clear Filters
ChIP-seq
cell line
HepG2360
GM1287859
Panc16
smooth muscle cell of the coronary artery6
RCC 7860 HIF1a re-expression4
tissue
liver80
islet of Langerhans20
body of pancreas18
spleen14
subcutaneous adipose tissue12
in vitro differentiated cells
adipocyte30
embryonic stem cell18
pancreatic endoderm8
neural progenitor cell7
definitive endodermal cell4
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast3
epithelial cell of proximal tubule3
stem cell
hESC1
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