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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1527total RNA-seq
  • 1357ChIP-seq
  • 531ATAC-seq
  • 369single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 34Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1357DNA binding
Target of assay
  • 1017histone modification
  • 1016histone
  • narrow histone mark
  • 514transcription factor
  • 501broad histone mark
  • 335control
  • 114RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 368November, 2017
  • 208August, 2017
  • 101May, 2021
  • 101October, 2019
  • 86May, 2019
  • 78December, 2017
  • 70November, 2018
  • 63October, 2018
  • 57April, 2019
  • 34December, 2018
  • 32August, 2021
  • 25May, 2024
  • 23May, 2020
  • 22January, 2019
  • 20June, 2019
  • 17September, 2018
  • 16February, 2018
  • 13October, 2017
  • 9November, 2019
  • 8February, 2021
  • 6September, 2017
Available data
  • 1173bam
  • 950bigWig
  • 896bed narrowPeak
  • 747fastq
  • 652bigBed narrowPeak
  • 224tagAlign
  • 85bed broadPeak
  • 65bigBed broadPeak
  • 40bed bed3+
  • 3tar
Organism
  • 1352Homo sapiens
Biosample type
  • 583tissue
  • 465cell line
  • 164primary cell
  • 143in vitro differentiated cells
  • 2stem cell
Organ
  • 492liver
  • 145pancreas
  • 120connective tissue
  • 101brain
  • 94heart
  • 80epithelium
  • 76vasculature
  • 74blood vessel
  • 61adipose tissue
  • 59blood
  • 59bodily fluid
  • 51limb
  • 37kidney
  • 28artery
  • 27nerve
  • 26musculature of body
  • 18spleen
  • 14embryo
  • 11vein
  • 2eye
Project
  • 1313AMP
  • 44T1D
Genome assembly (visualization)
  • 894hg19
  • 856GRCh38
Lab
  • 1222AMP-T2D consortium
  • 94Kyle Gaulton, UCSD
  • 25Patrick T. Ellinor, Broad
  • 16Bing Ren, UCSD
Audit category:
  • 40inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 60missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

1357 results

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Clear Filters
ChIP-seq
tissue
liver103
islet of Langerhans34
body of pancreas29
tibial nerve27
heart left ventricle26
cell line
HepG2369
GM1287859
Panc110
EndoC_BH19
smooth muscle cell of the coronary artery6
primary cell
monocyte44
CD8-positive, alpha-beta T cell23
endothelial cell of umbilical vein11
pancreatic endocrine cell11
pancreatic alpha cell9
in vitro differentiated cells
adipocyte51
embryonic stem cell29
neural progenitor cell14
pancreatic endoderm12
hepatocyte10
stem cell
hESC2
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