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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
878
ChIP-seq
306
total RNA-seq
222
ATAC-seq
104
single cell RNA-seq
34
DNase-seq
16
pCHi-C
14
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
FAIRE-seq
1
MPRA
1
WGBS
1
whole genome sequencing assay
Assay category
34
DNA accessibility
1
DNA methylation
Date released
24
June, 2019
6
October, 2019
3
August, 2017
1
May, 2021
1
November, 2020
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
30
bed broadPeak
30
bigBed broadPeak
28
bed bed3+
2
fastq
Organism
35
Homo sapiens
Biosample type
tissue
32
primary cell
2
cell line
1
in vitro differentiated cells
Organ
19
epithelium
13
kidney
7
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
35
AMP
Genome assembly (visualization)
30
GRCh38
25
hg19
Lab
35
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
organ_slims!
limb
BIOSAMPLE
ASSAY
35 results
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DNase-seq
DNAme array
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 19 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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