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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1066
total RNA-seq
914
ChIP-seq
442
ATAC-seq
231
single cell RNA-seq
197
DNase-seq
87
RNA microarray
57
snATAC-seq
53
pCHi-C
44
WGBS
23
Hi-C
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
45
DNA methylation
Date released
41
May, 2022
July, 2019
3
August, 2017
1
May, 2021
Available data
41
zippedFastqFolder
fastq
8
bam
8
bed bedMethyl
8
bigBed bedMethyl
8
bigWig
6
tsv
Organism
45
Homo sapiens
Biosample type
42
primary cell
3
tissue
Organ
41
epithelium
41
pancreas
3
adipose tissue
3
connective tissue
liver
Project
41
HPAP
4
AMP
Lab
41
Klaus Kaestner, Upenn
4
AMP-T2D consortium
files.file_type!
fastq
month_released!
July, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
45 results
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WGBS
DNAme array
primary cell
pancreatic alpha cell
25
pancreatic beta cell
16
monocyte
1
tissue
subcutaneous abdominal adipose tissue
3
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