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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
367
total RNA-seq
180
ATAC-seq
119
single cell RNA-seq
56
snATAC-seq
32
pCHi-C
15
DNase-seq
10
Hi-C
5
GRO-seq
5
STARR-seq
4
RRBS
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA accessibility
Date released
10
June, 2019
3
August, 2017
1
November, 2020
1
October, 2019
Available data
15
bam
15
bed narrowPeak
15
bigBed narrowPeak
15
bigWig
14
bed broadPeak
14
bigBed broadPeak
12
bed bed3+
2
fastq
Organism
15
Homo sapiens
Biosample type
tissue
13
primary cell
1
cell line
1
in vitro differentiated cells
Organ
epithelium
13
kidney
7
connective tissue
6
vasculature
5
brain
4
blood vessel
3
heart
2
liver
2
vein
1
eye
1
musculature of body
1
pancreas
Project
15
AMP
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
ChIP-seq
biosample_type!
tissue
organ_slims!
epithelium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
15 results
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DNase-seq
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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