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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1552
ChIP-seq
1040
total RNA-seq
521
ATAC-seq
369
single cell RNA-seq
205
DNase-seq
86
RNA microarray
84
snATAC-seq
66
WGBS
55
pCHi-C
34
Hi-C
15
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
205
DNA accessibility
Date released
186
June, 2019
10
October, 2019
8
November, 2018
August, 2017
1
November, 2020
Available data
203
bam
203
bed narrowPeak
203
bigBed narrowPeak
203
bigWig
202
bed bed3+
202
bed broadPeak
202
bigBed broadPeak
8
fastq
Organism
205
Homo sapiens
Biosample type
174
tissue
29
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
8
connective tissue
7
pancreas
5
liver
4
artery
4
eye
adipose tissue
2
nerve
2
vein
1
spleen
Project
205
AMP
Genome assembly (visualization)
203
GRCh38
180
hg19
Lab
205
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
DNAme array
whole genome sequencing assay
month_released!
August, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
205 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
+ See 17 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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