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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
553
ChIP-seq
199
single cell RNA-seq
199
total RNA-seq
195
ATAC-seq
85
RNA microarray
77
snATAC-seq
75
WGBS
51
pCHi-C
17
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
17
DNA accessibility
Date released
16
June, 2019
1
August, 2017
Available data
16
bam
16
bed bed3+
16
bed broadPeak
16
bed narrowPeak
16
bigBed broadPeak
16
bigBed narrowPeak
16
bigWig
Organism
17
Homo sapiens
Biosample type
16
tissue
1
primary cell
Organ
10
brain
kidney
8
epithelium
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
17
AMP
Genome assembly (visualization)
128
GRCh38
hg19
Lab
17
AMP-T2D consortium
assay_title!
DNAme array
assembly!
hg19
organ_slims!
kidney
BIOSAMPLE
ASSAY
17 results
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DNase-seq
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 9 more…
primary cell
cardiac fibroblast
1
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