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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1260
total RNA-seq
772
ChIP-seq
448
ATAC-seq
235
single cell RNA-seq
190
DNase-seq
87
RNA microarray
58
WGBS
57
snATAC-seq
52
pCHi-C
Hi-C
18
small RNA-seq
17
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
190
DNA accessibility
Date released
187
June, 2019
October, 2019
2
August, 2017
1
November, 2020
Available data
201
bam
201
bed narrowPeak
201
bigBed narrowPeak
201
bigWig
199
bed broadPeak
199
bigBed broadPeak
197
bed bed3+
fastq
Organism
190
Homo sapiens
Biosample type
164
tissue
26
primary cell
Organ
78
kidney
33
musculature of body
32
limb
30
brain
30
heart
18
ureter
14
epithelium
7
connective tissue
7
vasculature
5
blood vessel
4
eye
4
pancreas
3
liver
2
artery
1
adipose tissue
Project
190
AMP
Genome assembly (visualization)
188
GRCh38
166
hg19
Lab
190
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
Hi-C
files.file_type!
fastq
month_released!
October, 2019
BIOSAMPLE
ASSAY
190 results
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DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 17 more…
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