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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
112
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
17
DNase-seq
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
17
DNA accessibility
Date released
14
June, 2019
3
October, 2019
Available data
15
bam
15
bed narrowPeak
15
bigBed narrowPeak
15
bigWig
14
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
Organism
17
Homo sapiens
Biosample type
16
primary cell
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
17
AMP
Genome assembly (visualization)
15
GRCh38
9
hg19
Lab
17
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
vein
BIOSAMPLE
ASSAY
17 results
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DNase-seq
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
+ See 7 more…
cell line
glomerular visceral epithelial cell
1
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