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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1229
ChIP-seq
966
total RNA-seq
322
ATAC-seq
287
single cell RNA-seq
194
DNase-seq
87
RNA microarray
73
snATAC-seq
47
pCHi-C
24
WGBS
19
Hi-C
RRBS
16
small RNA-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
194
DNA accessibility
Date released
183
June, 2019
October, 2019
7
November, 2018
3
August, 2017
1
November, 2020
Available data
193
bam
193
bed narrowPeak
193
bigBed narrowPeak
193
bigWig
192
bed broadPeak
192
bigBed broadPeak
191
bed bed3+
8
fastq
Organism
194
Homo sapiens
Biosample type
167
tissue
27
primary cell
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
8
connective tissue
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
194
AMP
Genome assembly (visualization)
191
GRCh38
172
hg19
Lab
194
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
RRBS
biosample_type!
in vitro differentiated cells
month_released!
October, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
194 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
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