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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1217
total RNA-seq
1168
ChIP-seq
387
ATAC-seq
298
single cell RNA-seq
117
DNase-seq
85
RNA microarray
78
snATAC-seq
68
WGBS
51
pCHi-C
25
Hi-C
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
117
DNA accessibility
Date released
103
June, 2019
6
November, 2018
4
August, 2017
3
October, 2019
1
November, 2020
Available data
117
bam
117
bed narrowPeak
117
bigBed narrowPeak
117
bigWig
115
bed broadPeak
115
bigBed broadPeak
113
bed bed3+
9
fastq
Organism
117
Homo sapiens
Biosample type
101
tissue
14
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
blood vessel
9
connective tissue
8
pancreas
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
117
AMP
Genome assembly (visualization)
115
GRCh38
101
hg19
Lab
117
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
RRBS
organ_slims!
blood vessel
kidney
liver
BIOSAMPLE
ASSAY
117 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 26 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 6 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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