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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
543
ChIP-seq
257
single cell RNA-seq
245
total RNA-seq
234
ATAC-seq
87
RNA microarray
83
snATAC-seq
73
WGBS
52
pCHi-C
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
October, 2019
1
August, 2017
Available data
22
bam
22
bed bed3+
bed broadPeak
22
bed narrowPeak
22
bigBed broadPeak
22
bigBed narrowPeak
22
bigWig
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Project
3
AMP
Genome assembly (visualization)
hg19
2
GRCh38
Lab
3
AMP-T2D consortium
assay_title!
shRNA RNA-seq
assembly!
hg19
files.file_type!
bed broadPeak
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
3 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
right lobe of liver
1
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