Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1588
ChIP-seq
1455
total RNA-seq
484
ATAC-seq
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
60
WGBS
54
pCHi-C
31
Hi-C
19
RRBS
17
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
Date released
3
August, 2017
3
October, 2019
Available data
170
bam
170
bed narrowPeak
170
bigBed narrowPeak
170
bigWig
167
bed broadPeak
bigBed broadPeak
165
bed bed3+
3
fastq
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
tissue
1
cell line
Organ
3
epithelium
3
kidney
1
liver
1
pancreas
Project
6
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
6
AMP-T2D consortium
assay_title!
single cell RNA-seq
files.file_type!
bigBed broadPeak
month_released!
November, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
6 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
Download