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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1106
total RNA-seq
883
ChIP-seq
448
ATAC-seq
single cell RNA-seq
87
RNA microarray
57
snATAC-seq
55
WGBS
53
pCHi-C
30
Hi-C
16
RRBS
15
small RNA-seq
12
DNase-seq
10
MeRIP-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
12
DNA accessibility
Date released
June, 2019
10
October, 2019
1
August, 2017
1
November, 2020
Available data
19
bam
19
bed narrowPeak
19
bigBed narrowPeak
19
bigWig
16
bed broadPeak
16
bigBed broadPeak
14
bed bed3+
fastq
Organism
12
Homo sapiens
Biosample type
6
primary cell
4
tissue
2
cell line
Organ
5
epithelium
4
blood vessel
4
limb
4
vasculature
3
kidney
2
artery
2
nerve
2
vein
1
connective tissue
liver
1
pancreas
Project
12
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
12
AMP-T2D consortium
assay_title!
single cell RNA-seq
files.file_type!
fastq
month_released!
June, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
12 results
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DNase-seq
primary cell
endothelial cell of umbilical vein
2
kidney glomerular epithelial cell
1
kidney tubule cell
1
osteoblast
1
skeletal muscle myoblast
1
tissue
tibial artery
2
tibial nerve
2
cell line
Panc1
1
glomerular visceral epithelial cell
1
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