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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1451
ChIP-seq
816
total RNA-seq
308
ATAC-seq
182
single cell RNA-seq
178
DNase-seq
86
RNA microarray
37
pCHi-C
28
snATAC-seq
24
Hi-C
22
WGBS
14
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
178
DNA accessibility
Date released
162
June, 2019
8
November, 2018
6
October, 2019
2
August, 2017
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
175
bed bed3+
175
bed broadPeak
175
bigBed broadPeak
9
fastq
Organism
178
Homo sapiens
Biosample type
176
tissue
primary cell
2
cell line
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
178
AMP
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
178
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
snDrop-seq
biosample_type!
primary cell
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
178 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
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