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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1510
ChIP-seq
1246
total RNA-seq
374
ATAC-seq
211
single cell RNA-seq
124
DNase-seq
85
RNA microarray
34
pCHi-C
28
WGBS
24
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
FAIRE-seq
3
STARR-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
whole genome sequencing assay
Assay category
124
DNA accessibility
Date released
109
June, 2019
9
November, 2018
October, 2019
5
August, 2017
1
November, 2020
Available data
123
bam
123
bed narrowPeak
123
bigBed narrowPeak
123
bigWig
121
bed broadPeak
121
bigBed broadPeak
119
bed bed3+
12
fastq
Organism
124
Homo sapiens
Biosample type
106
tissue
17
primary cell
1
in vitro differentiated cells
Organ
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
124
AMP
Genome assembly (visualization)
121
GRCh38
107
hg19
Lab
124
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
October, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
124 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 29 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 9 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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