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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1648
ChIP-seq
1053
total RNA-seq
506
ATAC-seq
364
single cell RNA-seq
195
DNase-seq
86
RNA microarray
84
snATAC-seq
62
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
195
DNA accessibility
Date released
181
June, 2019
10
October, 2019
November, 2018
4
August, 2017
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
189
bed broadPeak
189
bigBed broadPeak
188
bed bed3+
2
fastq
Organism
195
Homo sapiens
Biosample type
168
tissue
25
primary cell
2
cell line
Organ
81
kidney
36
limb
33
musculature of body
30
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
connective tissue
6
pancreas
4
artery
4
eye
3
liver
2
nerve
2
vein
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
190
GRCh38
170
hg19
Lab
195
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
November, 2018
organ_slims!
connective tissue
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
195 results
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DNase-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 37 more…
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 14 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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