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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1229
total RNA-seq
918
ChIP-seq
424
ATAC-seq
229
single cell RNA-seq
189
DNase-seq
87
RNA microarray
57
snATAC-seq
56
WGBS
55
pCHi-C
28
Hi-C
small RNA-seq
16
RRBS
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
191
DNA accessibility
Date released
180
June, 2019
6
October, 2019
2
August, 2017
2
July, 2019
1
November, 2020
Available data
202
bam
202
bed narrowPeak
202
bigBed narrowPeak
202
bigWig
195
bed broadPeak
195
bigBed broadPeak
193
bed bed3+
fastq
Organism
191
Homo sapiens
Biosample type
165
tissue
24
primary cell
2
cell line
Organ
82
kidney
36
limb
33
musculature of body
31
brain
30
heart
20
epithelium
18
ureter
vasculature
10
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
3
liver
3
vein
2
nerve
1
adipose tissue
Project
191
AMP
Genome assembly (visualization)
185
GRCh38
166
hg19
Lab
191
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
small RNA-seq
files.file_type!
fastq
organ_slims!
vasculature
BIOSAMPLE
ASSAY
191 results
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Clear Filters
DNase-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
kidney
13
1
muscle of leg
13
brain
12
+ See 34 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
astrocyte of the cerebellum
1
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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